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・ Nexus 4/Shine
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Nexus file
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Nexus file : ウィキペディア英語版
Nexus file

The NEXUS file format (usually .nex or .nxs) is widely used in bioinformatics. Several popular phylogenetic programs such as Paup
*,〔(PAUP
*
) — Phylogenetic Analysis Using Parsimony
*and other methods〕 MrBayes,〔(MrBayes )〕 Mesquite, and MacClade〔(MacClade )〕 use this format.
== Syntax ==
Command inside square brackets (and ) are ignored (comment). Each block starts with BEGIN block_name; and finishes with END;〔(Detailed NEXUS specification )〕
An example for a simple DNA alignment would be:
#NEXUS
Begin data;
Dimensions ntax=4 nchar=15;
Format datatype=dna missing=? gap=-;
Matrix
Species1 atgctagctagctcg
Species2 atgcta??tag-tag
Species3 atgttagctag-tgg
Species4 atgttagctag-tag
;
End;

抄文引用元・出典: フリー百科事典『 ウィキペディア(Wikipedia)
ウィキペディアで「Nexus file」の詳細全文を読む



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